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EPPC-OASIS: Ontology-Aware Adaptation and Structured Inference Refinement for Electronic Patient-Provider Communication Mining in Secure Messages

arXiv

arXiv:2605.24172v1 Announce Type: new Abstract: Secure patient-provider messages contain clinically important communication behaviors that are difficult to characterize manually at scale. The Electronic Patient-Provider Communication (EPPC) framework provides an ontology for coding these behaviors, but automated extraction remains challenging because predictions must preserve fine-grained code/sub-code structure while grounding annotations in message text. We developed EPPC-OASIS, an ontology-aware adaptation approach for structured EPPC extraction, and combined it with deployable inference-refinement procedures designed to improve the coherence of final annotations. EPPC-OASIS augments supervised fine-tuning with a Wasserstein alignment objective that encourages alignment between model representation neighborhoods and EPPC ontology-derived neighborhoods, while inference refinement uses verification, self-consistency, hybrid correction, and selection or ensembling to address residual p

Measuring Alignment-Induced Activation Shifts Correctly: A Template-Controlled Difference-in-Differences Protocol

arXiv

arXiv:2605.24583v3 Announce Type: replace Abstract: Comparing a model's internal activations before and after alignment is a natural way to ask what safety training changes: one forms the matrix of paired aligned-minus-base activations on safety-relevant inputs and reads off its effective rank or top direction. We show the obvious way to form this matrix is confounded. The aligned model is evaluated under a chat template the base model never saw, so the naive difference conflates the alignment shift with chat formatting. We introduce a four-variant decomposition of the modification matrix (naive, template-controlled, within-aligned, and difference-in-differences, DiD) that separates the two effects. Template control alone removes a 2.0-3.9x inflation of the measured effective rank across Llama-3.1-8B, Gemma-2-9B, and Qwen-2.5-7B; the DiD contrast is what recovers the refusal direction of Arditi et al. (2024), lifting its cosine alignment from 0.18-0.39 to 0.50-0.86. Projection-ablation

control

Omissive Bias in Religious Representation: Benchmarking LLM Answers to Everyday Ethical Decision-making

arXiv

arXiv:2605.24319v1 Announce Type: new Abstract: As large language models become a default source of guidance on personal, moral, and existential questions, it matters whether they draw on the religious frameworks that have historically shaped such reasoning, or systematically omit them. In this paper, we ask a deliberately narrow question: when posed an everyday ethical question for which religious perspectives may be valuable, do LLMs invoke religion at all? In contrast to benchmarks that look for the presence of political leanings or social bias, we look for the absence of religious representation as a dimension of value alignment and bias in LLMs. We term this ``omissive bias.'' To measure omissive bias, we contribute the AllFaith Religious Representation Benchmark: 150 ethically and personally salient questions, sourced from in-the-wild chat transcripts and faith-community contributors, paired with an LLM-as-judge rubric that gives full credit for any mention of a religion, a relig

'Si'multaneous 'S'patial-'T'emporal Message Passing for Dynamic Graph Representation Learning

arXiv

arXiv:2605.25548v1 Announce Type: cross Abstract: Dynamic graph neural networks (DGNNs) that operate on snapshot sequences typically fall into one of two categories. \emph{Temporal-first} approaches build per-node temporal embeddings and only afterwards perform spatial aggregation, whereas \emph{Spatial-first} approaches invert this order, feeding the output of a graph convolution into a downstream temporal module. In either case, the rigid sequencing forces the second stage to consume an already-compressed summary produced by the first, ruling out joint reasoning over topology and evolution; concretely, the message-passing operator never gets to weight a neighbor's contribution by that neighbor's \emph{past} trajectory. This paper introduces \textbf{SiST-GNN} (\textbf{Si}multaneous \textbf{S}patial-\textbf{T}emporal \textbf{GNN}), which fuses the two signals inside a single message-passing operation rather than chaining them. Concretely, at each snapshot we maintain a recurrent hidden

Towards Efficient Large Language Reasoning Models via Extreme-Ratio Chain-of-Thought Compression

arXiv

arXiv:2602.08324v4 Announce Type: replace Abstract: Chain-of-Thought (CoT) reasoning successfully enhances the reasoning capabilities of Large Language Models (LLMs), yet it incurs substantial computational overhead for inference. Existing CoT compression methods often suffer from a critical loss of logical fidelity at high compression ratios, resulting in significant performance degradation. To achieve high-fidelity, fast reasoning, we propose a novel EXTreme-RAtio Chain-of-Thought Compression framework, termed Extra-CoT, which aggressively reduces the token budget while preserving answer accuracy. To generate reliable, high-fidelity supervision, we first train a dedicated semantically-preserved compressor on mathematical CoT data with fine-grained annotations. An LLM is then fine-tuned on these compressed pairs via a mixed-ratio supervised fine-tuning (SFT), teaching it to follow a spectrum of compression budgets and providing a stable initialization for reinforcement learning (RL).

reinforcement-learning

NSR-Boost: A Neuro-Symbolic Residual Boosting Framework for Industrial Legacy Models

arXiv

arXiv:2601.10457v3 Announce Type: replace Abstract: Although the Gradient Boosted Decision Trees (GBDTs) dominate industrial tabular applications, upgrading legacy models in high-concurrency production environments still faces prohibitive retraining costs and systemic risks. To address this problem, we present NSR-Boost, a neuro-symbolic residual boosting framework designed specifically for industrial scenarios. Its core advantage lies in being ``non-intrusive''. It treats the legacy model as a frozen model and performs targeted repairs on "hard regions" where predictions fail. The framework comprises three key stages: First, finding hard regions through residuals, then generating interpretable experts by generating symbolic code structures using Large Language Model (LLM) and fine-tuning parameters using Bayesian optimization, and finally dynamically integrating experts with legacy model output through a lightweight aggregator. Experimental results demonstrate that the framework signi

Adaptive Preconditioners Trigger Loss Spikes in Adam

arXiv

arXiv:2506.04805v2 Announce Type: replace Abstract: Loss spikes commonly emerge during neural network training with the Adam optimizer across diverse architectures and scales, yet their underlying mechanism remains elusive. While previous explanations attribute these phenomena to sharper loss landscapes at lower loss, we show that landscape geometry alone is insufficient to explain the phenomenon. In this work, we pinpoint the root cause in the internal dynamics of Adam's second moment estimator. We identify a critical ``decoupling'' mechanism where the adaptive preconditioner $v_t$ fails to track the instantaneous squared gradients $g_t^2$, causing the adaptive mechanism to effectively fail. This decoupling allows the preconditioner to decay autonomously despite rising gradients, which pushes the maximum eigenvalue of the preconditioned Hessian beyond the stability threshold $2/\eta$ for sustained periods, manifesting as dramatic loss spikes. Through a quadratic approximation analysis

autonomous

Distilling Game Code World Model Generation into Lightweight Large Language Models

arXiv

arXiv:2605.24375v1 Announce Type: new Abstract: Large Language Models (LLMs) have shown great ability in generating executable code from natural language, opening the possibility of automatically constructing environments for AI agents. Recent work on Code World Models (CWMs) demonstrates that LLMs can translate game rules into Python implementations compatible with solvers like Monte Carlo Tree Search. We study this problem in game settings, where generated environments must implement rules, legal actions, state transitions, observations, and rewards. We refer to these game-specific executable models as Game Code World Models (GameCWMs). However, current approaches to generating code world models rely on frontier models and inference-time refinement loops, limiting accessibility and scalability. This work investigates whether GameCWM generation capabilities can be distilled into smaller models through post-training. We introduce: (1) a curated dataset of 30 games spanning perfect and

MEMTIER: Tiered Memory Architecture and Retrieval Bottleneck Analysis for Long-Running Autonomous AI Agents

arXiv

arXiv:2605.03675v3 Announce Type: replace Abstract: Long-running autonomous AI agents suffer from a well-documented memory coherence problem: tool-execution success rates degrade 14 percentage points over 72-hour operation windows due to four compounding failure modes in existing flat-file memory systems. We present MEMTIER, a tripartite memory architecture for the OpenClaw agent runtime that introduces a structured episodic JSONL store, a five-signal weighted retrieval engine, an attention-attributed cognitive weight update loop, an asynchronous consolidation daemon promoting episodic facts to a semantic tier, and a PPO-based policy framework for adapting retrieval weights (infrastructure validated; performance gains pending camera-ready). On the full 500-question LongMemEval-S benchmark (Wu et al., 2025), MEMTIER achieves Acc=0.382, F1=0.412 with Qwen2.5-7B on a consumer 6GB GPU - a +33 percentage point improvement over the full-context baseline (0.050 -> 0.382, i.e., 5% -> 38%). Wit

autonomous

RECTOR: Priority-Aware Rule-Based Reranking for Compliance-Aware Autonomous Driving Trajectory Selection

arXiv

arXiv:2605.25095v1 Announce Type: new Abstract: Autonomous driving stacks must pick one trajectory from a multi-modal candidate set; choosing by model confidence ignores safety, traffic-law, and comfort constraints. We present \textsc{RECTOR} (Rule-Enforced Constrained Trajectory Orchestrator), a post-generation reranking layer that scores candidates against a tiered rulebook (Safety~$\succ$~Legal~$\succ$~Road~$\succ$~Comfort) via differentiable proxies and a scene-conditioned applicability mechanism, then selects with a deterministic $\varepsilon$-lexicographic rule that preserves cross-tier priority by construction -- without retraining the predictor. On the Waymo Open Motion Dataset \texttt{validation\_interactive} split (43{,}219 augmented instances, $K{=}6$), under Protocol~B (28-rule proxy catalog, oracle applicability) rule-aware selection cuts Safety+Legal violations from 28.58\% to 20.42\% and Total from 40.32\% to 32.41\% versus confidence-only on the same candidates. A unifo

autonomous

Hypothesis Generation and Inductive Inference in Children and Language Models

arXiv

arXiv:2605.24528v2 Announce Type: replace Abstract: Real world decision-making requires constructing mental models under uncertainty over evidence, over the underlying causal rules, and over the state of the world itself. Which computational principles underpin human inference under such conditions, and do LLM-based agents exhibit similar behavior given matching constraints? We address these questions using an inductive inference Box Task in which participants, human children and LLM-based agents, infer a latent cause through sequential interaction with an uncertain environment. We formalize this task as program induction with Bayesian particle-based inference, admitting two complementary interpretations: (1) as a constraint satisfaction process over hypotheses, and (2) as a program synthesis problem in which hypotheses are executable programs evaluated against evidence. Using the constraint-based formulation, we show that children's behavior is best explained by a combination of subje

A Deep Dive into Axiomatic Design -- Part I: Problem Formulation

arXiv

arXiv:2605.25735v1 Announce Type: new Abstract: Problem formulation translating customer needs and constraints into a minimum set of independent first-level functional requirements, is arguably the most critical step in every design framework, including axiomatic design yet it is frequently misunderstood or underestimated in practice. This paper focuses exclusively on problem formulation in axiomatic design it clarifies what first-level FRs are (and are not), explains why they should not legitimately vary across designers given the same needs and constraints, and highlights intrinsic difficulties and recurring pitfalls that lead to design failure. The discussion is grounded primarily in Nam P.Suh's three books. The Principles of Design, Axiomatic Design Advances and Applications, and Complexity Theory, and it offers practical guidance to help designers formulate well-posed first-level FRs. Finally, the paper briefly revisits problem formulation in the era of large language models and d

Topology-Driven Transferability Estimation of Medical Foundation Models for Segmentation

arXiv

arXiv:2602.23916v2 Announce Type: replace-cross Abstract: The advent of large-scale self-supervised learning (SSL) has produced a vast zoo of medical foundation models. However, selecting optimal medical foundation models for specific segmentation tasks remains a computational bottleneck. Existing Transferability Estimation (TE) metrics, primarily designed for classification, rely on global statistical assumptions and fail to capture the topological complexity essential for dense prediction. We propose a novel Topology-Driven Transferability Estimation framework that evaluates manifold tractability rather than statistical overlap. Our approach introduces three components: (1) Global Representation Topology Divergence (GRTD), utilizing Minimum Spanning Trees to quantify feature-label structural isomorphism; (2) Local Boundary-Aware Topological Consistency (LBTC), which assesses manifold separability specifically at critical anatomical boundaries; and (3) Task-Adaptive Fusion, which dyna

medical

Clustering as Reasoning: A $k$-Means Interpretation of Chain-of-Thought Graph Learning

arXiv

arXiv:2605.24867v1 Announce Type: new Abstract: Chain-of-Thought (CoT) prompting has shown promise in enhancing the reasoning capabilities of large language models (LLMs) on text-attributed graphs (TAGs). This work reframes CoT-based graph learning through the principle of clustering as reasoning, offering a $k$-means interpretation of how iterative reasoning operates over graph-structured data. We observe that existing graph CoT methods rely on disjoint architectures and fixed graph representations, limiting step-by-step semantic-topological interaction and interpretability. To overcome this limitation, we propose a unified framework named KCoT that integrates CoT reasoning with graph representation learning. Our key theoretical result reveals a formal mathematical correspondence between a Transformer block and the $k$-means algorithm, allowing reasoning to be interpreted as iterative assignment and update steps. Based on this insight, we introduce a Semantic Discriminating Prompt tha

StakeBench: Evaluating Language Understanding Grounded in Market Commitment

arXiv

arXiv:2605.26074v1 Announce Type: cross Abstract: Existing financial NLP benchmarks often rely on labels supplied by outside observers, measuring how language is perceived rather than what speakers have committed to in the market. We introduce StakeBench, an evaluation framework for language understanding grounded in market commitment. StakeBench links 560,876 comments from 2,261 resolved markets to verified position, action, and market-odds records across Polymarket and Manifold. Supervision is derived from observable market behavior. Position sides, post-comment trading actions, and market-odds trajectories replace human annotation. Four diagnostic tasks test whether models detect market commitment, identify the revealed side, anticipate future action, and perform collective odds projection. Three commitment-aware metrics measure alignment with revealed preferences rather than perceived sentiment. Validity audits and explicit interpretation boundaries help distinguish observable comm

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