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From Prompt Optimization to Multi-Dimensional Credibility Evaluation: Enhancing Trustworthiness of Chinese LLM-Generated Liver MRI Reports -- with Preliminary Extension to Lung Cancer

arXiv

arXiv:2510.23008v3 Announce Type: replace Abstract: Large language models (LLMs) have demonstrated promising performance in generating diagnostic conclusions from imaging findings, thereby supporting radiology reporting, trainee education, and quality control. However, systematic guidance on how to optimize prompt design across different clinical contexts remains underexplored. Moreover, a comprehensive and standardized framework for assessing the trustworthiness of LLM-generated radiology reports is yet to be established. This study aims to enhance the trustworthiness of LLM-generated liver MRI reports by introducing a Multi-Dimensional Credibility Assessment (MDCA) framework and providing guidance on institution-specific prompt optimization. The proposed framework is applied to evaluate and compare the performance of several advanced LLMs, including Kimi-K2-Instruct-0905, Qwen3-235B-A22B-Instruct-2507, DeepSeek-V3, and ByteDance-Seed-OSS-36B-Instruct, using the SiliconFlow platform.

control

Machine Learning Multiscale Interactions

arXiv

arXiv:2605.25710v1 Announce Type: cross Abstract: Realistic physical systems are characterised by emergent interactions across multiple length and time scales, posing a significant challenge for predictive machine learning (ML) models. Most scientific ML models focus on a narrow range of interactions. While machine learning force fields (MLFFs) offer near-quantum accuracy, the ubiquitous message-passing layers miss long-range many-body effects. Here we introduce the Multiscale Structural Ensemble (MuSE), a hierarchical model that uses Soft Coarse-Graining Pooling to construct coarse representations from smooth fractional assignments of atoms to coarse nodes, enabling MLFF modules to operate across multiple scales. MuSE is architecture-agnostic and coupled with SO3krates, MACE, and PaiNN MLFFs for both molecules and materials. We demonstrate the power of MuSE through Hessian-based benchmarks, folding trajectories for biomolecules, and energy profiles in molecule-graphene nanostructures,

Chain-of-Thought Hijacking

arXiv

arXiv:2510.26418v4 Announce Type: replace Abstract: Large Reasoning Models (LRMs) improve task performance through extended inference-time reasoning. Although previous studies suggest that longer reasoning should lead to more robust safety behavior, we find evidence to the contrary: over-extended reasoning can instead be exploited to systematically weaken refusal behavior. We propose Chain-of-Thought Hijacking, a simple yet effective black-box jailbreak attack that induces LRMs to engage in prolonged benign puzzle-solving reasoning, often lasting more than five minutes, before eliciting harmful compliance. Across HarmBench, CoT Hijacking achieves attack success rates of 99%, 94%, 100%, and 94% on Gemini 2.5 Pro, ChatGPT o4 Mini, Grok 3 Mini, and Claude 4 Sonnet, respectively. To understand why this attack succeeds, we conduct activation probing, attention-pattern analysis, and causal interventions on open-source reasoning models. Our results indicate that refusal behavior depends on a

Lifted Schr\"odinger Bridges for Gaussian Mixture Endpoints: Projection Gaps and Path-Space Obstructions

arXiv

arXiv:2605.24795v1 Announce Type: cross Abstract: We study stochastic density control between Gaussian-mixture endpoint distributions under Brownian prior dynamics. Since the direct Schr\"odinger bridge between Gaussian mixtures is generally not available in closed form, we introduce a lifted path-space construction in which each trajectory is augmented with a source--target component label. Consequently, the problem decomposes into Gaussian component-to-component Schr\"odinger bridges with explicit marginal, drift, and cost formulas, while the mixture-level assignment reduces to a finite-dimensional entropic coupling problem with a Sinkhorn scaling form. We then analyze the projection obtained by discarding or forgetting the label. By construction, the projected law satisfies the original Gaussian-mixture endpoint constraints, but its relative entropy generally differs from the lifted relative entropy by a nonnegative conditional label-information gap. This gap reveals a path-space ob

control

EvoEGF-Mol: Evolving Exponential Geodesic Flow for Structure-based Drug Design

arXiv

arXiv:2601.22466v2 Announce Type: replace Abstract: Structure-Based Drug Design (SBDD) aims to discover bioactive ligands. Conventional approaches construct probability paths separately in Euclidean and probabilistic spaces for continuous atomic coordinates and discrete chemical categories, leading to a mismatch with the underlying statistical manifolds. We address this issue by representing molecules using composite exponential-family distributions, where coordinates and categories are represented within a unified natural parameter space to evolve synchronously along exponential geodesics under the Fisher-Rao metric. To avoid the instantaneous trajectory collapse induced by geodesics directly targeting Dirac distributions, we propose Evolving Exponential Geodesic Flow for SBDD (EvoEGF-Mol), which replaces static Dirac targets with dynamically concentrating distributions and is trained with a progressive-parameter-refinement architecture. Our model approaches a reference-level PoseBust

Agent-ToM: Learning to Monitor Autonomous LLM Agents via Theory-of-Mind Reasoning

arXiv

arXiv:2605.24216v1 Announce Type: cross Abstract: Monitoring autonomous large language model (LLM) agents for covert malicious behavior is challenging due to delayed, context-dependent, and long-horizon attack patterns. Agents may pursue hidden objectives while maintaining superficially benign behavior, making detection difficult even with full trajectory access. Prior monitoring approaches improve scaffolding or ensemble aggregation, but treat each trajectory independently and do not learn from prior monitoring experience. Moreover, standard reasoning methods explain observed behavior without explicitly reasoning about agent beliefs, intentions, and goal alignment required to distinguish benign task execution from covert deviation. We propose \textbf{Agent-ToM}, a learning-to-monitor framework grounded in Theory-of-Mind (ToM) reasoning for security analysis of autonomous agents. Agent-ToM performs structured full-trajectory analysis by inferring beliefs, intent hypotheses with calibra

autonomous

The Implicit Bias of Adam and Muon on Smooth Homogeneous Neural Networks

arXiv

arXiv:2602.16340v3 Announce Type: replace Abstract: We study the implicit bias of momentum-based optimizers on smooth homogeneous models. We show that \textit{momentum steepest descent} algorithms like Muon (spectral norm), MomentumGD ($\ell_2$ norm), and Signum ($\ell_\infty$ norm) are \textit{approximate} steepest descent trajectories under a decaying learning rate schedule, proving that these algorithms have a bias towards KKT points of the corresponding margin maximization problem. We extend the analysis to Adam (without the stability constant), which maximizes the $\ell_\infty$ margin, and to Muon-Signum and Muon-Adam, which maximize a hybrid norm. Our experiments corroborate the theory and show that the identity of the margin maximized depends on the choice of optimizer. Overall, our results extend earlier lines of work on steepest descent in homogeneous models and momentum-based optimizers in linear models.

Rewarding Structural Conformance of Reasoning using Process Mining

arXiv

arXiv:2510.25065v3 Announce Type: replace Abstract: Recent advances in sparse reward policy gradient methods have enabled effective reinforcement learning (RL)-based language model post-training. However, for reasoning tasks such as mathematical problem solving, binarized outcome rewards provide limited feedback on intermediate reasoning steps. While some studies have attempted to address this issue by estimating overall reasoning quality, it remains unclear whether these rewards are reliable proxies for the quality of stepwise reasoning. In this study, we consider reasoning as a structured process and propose TACReward, the reward model that can be seamlessly integrated into sparse reward policy gradient methods without additional human annotation costs or architectural modifications. TACReward aggregates stepwise structural deviations between teacher and policy reasoning using process mining techniques, producing a scalar output reward range of [0, 1] to indicate reasoning quality. E

reinforcement-learning

VEN-VL: A Visual Ensemble MoE Framework for Effective and Efficient Multi-Modal Understanding

arXiv

arXiv:2605.25952v1 Announce Type: cross Abstract: Despite the remarkable progress achieved by recent efficient methods in accelerating multimodal understanding, they still suffer from noticeable performance degradation. Their emphasis on the high compression ratio of a single visual clue and reliance on the heuristic pruning strategy with coarse attention alignment incurs a bottleneck on the information capacity and density of visual tokens. Addressing this limitation, we propose VEN-VL, a visual ensemble MoE framework for effective and efficient perception following the enrich then compact principle. Specifically, we first enrich the information capacity by unifying the visual representations of different perspectives, and then progressively compact it with adaptive routers in specialized visual experts to enhance the information density. Furthermore, we incorporate the reconstruction ability of vanilla structure via explicit visual supervision, facilitating crucial information preser

perception

Guided Flow Matching for Forward and Inverse PDE Problems with Sparse Observations: Algorithm and Theory

arXiv

arXiv:2605.25509v1 Announce Type: cross Abstract: Reconstructing PDE solutions from sparse observations is a core challenge in scientific computing. We present FM4PDE, a flow-matching generative framework that learns the joint distribution of PDE coefficients (or initial states) and solutions (or final states), enabling both forward simulation and inverse recovery with limited paired data. At inference, sampling is guided by a composite loss that enforces agreement with sparse measurements and reduces the PDE residual; we support deterministic, stochastic, and hybrid samplers. We provide error guarantees for these guided procedures. For the deterministic optimizer, a coercivity condition ensures trajectory boundedness and a phase-wise contraction yields logarithmic complexity in the target accuracy. For the stochastic sampler, we introduce adaptive guidance and assume dissipativity of the velocity field to obtain uniform moment bounds independent of the noise-floor parameter. This lead

Physical Analogue Kolmogorov-Arnold Networks based on Reconfigurable Nonlinear-Processing Units

arXiv

arXiv:2602.07518v2 Announce Type: replace-cross Abstract: Kolmogorov-Arnold Networks (KANs) shift neural computation from linear layers to learnable nonlinear edge functions, but implementing these nonlinearities efficiently in hardware remains an open challenge. Here we introduce a physical analogue KAN architecture in which edge functions are realized in materia using reconfigurable nonlinear-processing units (RNPUs): multi-terminal nanoscale silicon devices whose input-output characteristics are tuned via control voltages. By combining multiple RNPUs into an edge processor and assembling these blocks into a reconfigurable analogue KAN (aKAN) architecture with integrated mixed-signal interfacing, we establish a realistic system-level hardware implementation that enables compact KAN-style regression and classification with programmable nonlinear transformations. Using experimentally calibrated RNPU models and hardware measurements, we demonstrate accurate function approximation across

control

Fredholm Neural Networks for inverse problems in elliptic PDEs

arXiv

arXiv:2507.06038v4 Announce Type: replace-cross Abstract: Building on our previous work on Fredholm Neural Networks (Fredholm NNs/ FNNs) for solving integral equations, we extend the framework to inverse problems for linear and nonlinear elliptic partial differential equations. The proposed scheme consists of a custom-designed deep neural network (DNN) in which the number of layers, weights, biases and hyperparameters are computed in an explainable manner based on a fixed-point scheme, and we therefore refer to this as the Potential Fredholm Neural Network (PFNN). We first build the PFNN as a method for solving the forward problem, showing that this approach ensures both a high accuracy and explainability, achieving small errors in the interior of the domain, and near machine-precision on the boundary. We then use this approach to solve inverse problems for elliptic PDEs, and provide a rigorous proof for the consistency of the scheme and error bounds for both the interior and boundary

Position: AI for Science Should Treat Measurement-to-Dataset Pipelines as Inference Components

arXiv

arXiv:2605.24558v1 Announce Type: new Abstract: AI for Science (AI4Science) workflows often treat the released dataset as a fixed interface to the underlying system. However, in domains relying on \emph{indirect observation}, the learner observes a derivative representation produced by multi-stage measurement, reconstruction, and preprocessing pipelines. \textbf{We argue that these measurement-to-dataset pipelines are inference components: treating their outputs as ``given data'' freezes an observation model and obscures uncertainty over feasible pipeline choices.} We identify three failure modes arising from this ``frozen lens'': \textbf{(C1) hidden hypothesis space}, where the released dataset does not specify the pipeline configuration or its validity conditions; \textbf{(C2) uncertified transportability}, where a pipeline may be documented but its regime of validity is untested, so failures under distribution shift cannot be adjudicated; \textbf{(C3) ungoverned multiplicity}, where

Investigating the Interplay between Contextual and Parametric Chain-of-Thought Faithfulness under Optimization

arXiv

arXiv:2605.24960v1 Announce Type: cross Abstract: Chain-of-Thought (CoT) faithfulness, i.e., whether CoTs genuinely reflect large language models' (LLM) underlying behavior, is typically evaluated under two disjoint paradigms: contextual faithfulness, measured by perturbing the input or CoT trace, and parametric faithfulness, assessed by intervening on a model's parametric knowledge. Yet prior work compares them only descriptively. We fill this gap by proposing FaithMate, a unified preference-alignment interface for optimizing models towards either faithfulness paradigm. It enables us to investigate the interplay between the two paradigms, examining whether and to what extent faithfulness gains generalize within and across paradigms. Across three models, two datasets, and six faithfulness metrics, we find that the two paradigms are positively coupled, yet asymmetric: optimizing towards parametric faithfulness yields consistent gains across both paradigms, whereas the contextual counter

MindAlign: Bridging EEG, Vision, and Language for Zero-Shot Visual Decoding

arXiv

arXiv:2605.24523v1 Announce Type: new Abstract: Visual decoding from brain signals is a key challenge at the intersection of computer vision and neuroscience, requiring methods that bridge neural representations and computational models of vision. We introduce a tri-modal contrastive framework for EEG-based visual decoding that aligns EEG, visual, and textual representations within a unified latent space. Our approach follows a two-stage design. First, we pre-train an EEG encoder via masked reconstruction on unlabeled trials, learning spatio-temporal regularities that transfer robustly to downstream tasks. Second, we jointly align EEG, image, and LLM-generated textual descriptions through contrastive learning, where text supervision acts as a semantic regularizer that injects linguistic structure into the shared space without overwhelming the primary EEG-image signal. The encoder integrates subject-specific adaptation, graph-attention over channels, and temporal-spatial convolutional e

computer-vision

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