News & Research

arXiv:2605.28659v1 Announce Type: new Abstract: Biological foundation models have shown strong performance in single-cell representation learning by applying transformer architectures directly to gene-expression matrices. However, these approaches predominantly operate in static settings and do not explicitly model the temporal evolution of developmental programs in the cell. Modeling such dynamics is important for understanding how cellular states progressively emerge, differentiate, and reorganize during development or disease progression. In this work-in-progress paper, we investigate an alternative temporal graph-based perspective in which cellular states are represented through pseudotime-resolved gene regulatory networks and modeled as evolving graph structures over persistent gene identities. Starting from single-cell transcriptomic data, we infer pseudotime trajectories, discretize cells into developmental snapshots, reconstruct one gene regulatory network per snapshot, and app

arXiv:2605.28664v1 Announce Type: new Abstract: Safety detection models require examples of HHH (Helpful, Harmless, Honest)-violating outputs for robust generalization, however such examples are scarce. Activation Steering (AS) has emerged as a data-efficient method for generating target-concept-aligned responses. We investigate whether AS can generate high-quality training datasets for downstream classifiers, a question that remains untested. We present a two-fold study with intrinsic and extrinsic evaluation across $4$ concepts $\times\,2$ models $\times\,4$ steering methods. Intrinsically, beyond the field-standard rubric of steering success (concept alignment) and coherence, we introduce sample- and set-level diversity as a quality axis previously absent from the literature, and find that increasing steering strength reduces response diversity. Extrinsically, we replace HHH-violating examples in the available training data with steered generations and fine-tune detection classifier

arXiv:2605.28675v1 Announce Type: new Abstract: Data acquisition efficiency is a central challenge in deploying reinforcement learning in business and healthcare operations, where interactions are costly, slow, and often involve humans in the loop. This paper develops a unified large deviations framework for data acquisition in infinite-horizon reinforcement learning. We introduce the exponential decay rate of the policy-selection error probability as a principled efficiency metric and derive a variational characterization of this rate via large deviations theory for Markov chains, yielding a nested optimization problem. Based on this characterization, we formalize two complementary notions of optimality in terms of the optimal solution of the nested problem. Because the resulting program is implicit and generally intractable, we propose a tractable convex relaxation with explicit constraints. We then develop a lazy one-step projected subgradient method to solve the relaxed problem and

arXiv:2605.28679v1 Announce Type: new Abstract: We consider $L^2$-regularized linear (ridge) regression over a finite data sample $X$ with bounded covariance and linear prediction targets $y$ with additive isotropic noise of finite variance. We present an iterative procedure to compute the optimal regularization strength numerically from the generative parameters in the fixed-$X$ setting and prove its convergence at limited noise levels. Our experimental evaluation over synthetic data shows that the proposed procedure combined with sample-based parameter estimates attains near-optimal random-$X$ generalization across a wide range of sample sizes, aspect ratios, and noise levels, at an added computational cost equivalent to one preliminary ridge regression in the underparameterized regime and two in the overparameterized case.

arXiv:2605.28705v1 Announce Type: new Abstract: In-context learning (ICL) derives its power from enabling Large Language Models to adapt to new tasks via prompt-based reasoning alone, entirely bypassing the need for parameter updates. Existing theories primarily study ICL in single-task settings, while real-world prompts often contain sequences of heterogeneous tasks, leaving a gap in understanding whether Large Language Models implicitly perform continual learning during inference. To bridge this gap, we propose the first theoretical framework for in-context continual learning, modeling how a pretrained Transformer processes multiple sequential tasks within a single prompt through shared attention mechanisms. Focusing on linear and masked linear self-attention, we derive error expressions for model predictions under sequential task prompts and analyze their generalization and forgetting behavior. Our results reveal that standard attention mechanisms inevitably induce intertask interfe

arXiv:2605.28711v1 Announce Type: new Abstract: The distortion-perception (D-P) tradeoff is a fundamental phenomenon of Bayesian inverse problems, which characterizes the inherent tension between distortion performance and perceptual quality. Enabling flexible traversal of the D-P tradeoff at inference time is crucial for practical applications. Despite the recent success of diffusion models in zero-shot inverse problem solving, efficient and principled strategies for D-P traversal in diffusion-based inverse algorithms remain inadequately characterized. In this paper, we propose a stage-wise framework for realizing D-P traversal using a single diffusion model in zero-shot inverse problems. Our proposed method, termed MAP-RPS, starts with an MAP estimation stage that approximates the MMSE solution and provides a low-distortion initialization, followed by a re-noised posterior sampling stage that progressively improves perceptual quality. We provide theoretical analyses for both stages,

arXiv:2605.28760v1 Announce Type: new Abstract: Zeroth-order (ZO) fine-tuning is attractive for large language models because it replaces backpropagation with forward objective evaluations. Existing implementations nevertheless execute ZO algorithms inside conventional training loops, even though their dominant work is repeated scoring under nearby parameter states. This creates a workload-runtime mismatch: the algorithm asks for structured inference-style scoring, while the system exposes a sequence of fragmented training-loop steps. We show that LLM ZO fine-tuning is an inference-dominated workload and execute its repeated scoring phase through a serving runtime. On OPT-13B SST-2, the resulting vLLM execution path completes the 20k-step LoZO run in 0.51 estimated training hours versus 4.15 hours for the official LoZO baseline under the matched LoRA-only setting, an 8.13x speedup, while reaching 0.922 final evaluation accuracy and 0.931 final full-validation accuracy. In core-step sca

arXiv:2605.28767v1 Announce Type: new Abstract: Many real-world classification tasks require predicting multiple labels per instance, necessitating the optimization of complex evaluation metrics such as the $F$-measure and Jaccard index. While the Empirical Utility Maximization (EUM) framework is natural for these population-level metrics, existing theoretical results are largely limited to asymptotic Bayes-consistency. In this paper, we develop principled learning algorithms for optimizing a broad class of generalized metrics within the EUM framework, grounded in the stronger notion of $H$-consistency. Our key contribution is the design of novel surrogate loss functions for multi-label learning that admit provable $H$-consistency bounds, enabling optimization with non-asymptotic guarantees tailored to the hypothesis class and finite samples. Crucially, we prove these combinatorially formulated surrogates decompose exactly, operating in strictly $O(l)$ time without approximations. Buil

arXiv:2605.28769v1 Announce Type: new Abstract: Softmax attention is the cornerstone of modern large language models, but its memory scales linearly and compute quadratically with sequence length. Linear recurrent models, such as linear attention and state space models, have become widely studied as alternatives to attention due to their linear compute and constant memory. While these sub-quadratic token mixing methods, or mixers, achieve promising efficiency gains and competitive results on a wide range of benchmarks, current linear recurrent models still lag behind on tasks that require long-context retrieval or in-context learning. A growing body of work studies hybrid architectures that attempt to mitigate these trade-offs by statically interleaving or merging attention and recurrent blocks. In this work, we explore a new axis of developing hybrid models: across the token sequence. We propose Oryx, a hybrid model that can, throughout a sequence, flexibly switch between different mi

arXiv:2605.28819v1 Announce Type: new Abstract: Parameter-efficient finetuning (PEFT) has become the standard approach for adapting large language models, yet evaluations largely emphasize downstream accuracy while overlooking the retention of pretrained capabilities. We argue that PEFT should be assessed through the stability-plasticity dilemma: the trade-off between target-task adaptation and resistance to forgetting. We introduce PEFT-Arena, a benchmark that jointly measures downstream performance and general capability retention. Across methods, we find distinct stability-plasticity profiles; under comparable parameter budgets, orthogonal finetuning achieves the most favorable Pareto frontier. To explain these differences, we analyze PEFT updates from two geometric perspectives. In weight space, spectral analysis reveals how parameterizations interact with the pretrained singular-value structure. In activation space, retention metrics show whether finetuning preserves or distorts g

arXiv:2605.27408v1 Announce Type: cross Abstract: Partial differential equations (PDEs) are central to modeling physical and engineering systems, but repeatedly solving parametric PDEs remains computationally expensive. Operator learning enables fast surrogate inference, yet typically requires large input-output paired datasets generated by costly high-fidelity PDE solvers. Unsupervised operator learning frameworks alleviate data dependency but remain hindered by computational bottlenecks. To address this, we propose Neural Variational Quantum Linear Solver (NVQLS), the first hybrid quantum-classical operator learning framework leveraging the Legendre--Galerkin weak formulation. We critically resolve the sign ambiguity in VQLS energy minimization, preventing erroneous solution representations. Additionally, we introduce a neural embedding, a novel encoding scheme to map varying forcings and PDE coefficients into parameterized quantum circuit representations. These structural innovation

arXiv:2605.27410v1 Announce Type: cross Abstract: Variational Quantum Algorithms (VQAs) are a leading approach to exploiting near-term quantum hardware, leveraging parameterized quantum circuits and classical optimization to achieve advantage. Despite their promise, the practical deployment of VQAs is challenged by the difficulty of designing quantum circuit architectures that balance expressivity, trainability, and hardware constraints. Existing evolutionary-based quantum neural architecture search methods address these challenges but suffer from high computational costs due to repeated training of candidate circuits. In this work, we identify a setting in which the Gram matrix of the Quantum Neural Tangent Kernel converges. Building on this observation, we design a zero-shot surrogate model to estimate candidate performance without full training, significantly accelerating the architecture search process. Using this surrogate, we propose MZeQAS, a Monte Carlo Tree Search (MCTS)-based

arXiv:2605.27411v1 Announce Type: cross Abstract: Aim/Introduction: Distance-encoding biomorphic-informational neural network (DEBI-NN) is a recently proposed architecture in which connection weights are defined by the distances between neurons positioned in a Euclidian space. This approach drastically reduces the number of trainable parameters compared to classical neural networks in which weights are directly trained. The training process for DEBI-NN is based on a genetic algorithm (GA), rather than gradient descent (GD) which remains the prevailing optimization algorithm in deep learning. We aim to design and implement a GD learner for DEBI-NN and assess its performance compared to GA. Materials and Methods: We designed a spatial backpropagation scheme tailored to DEBI-NN and carried out a comparison between GD and GA for classification tasks, using a synthetic non-linear "two-moons" dataset, two clinical medical imaging radiomic datasets and a fetal cardiotocography dataset with a

arXiv:2605.27473v1 Announce Type: cross Abstract: Estimating how much an intervention helps a given individual the conditional average treatment effect (CATE) is increasingly central to decision-making in medicine, economics, and policy, where an estimate is most useful when accompanied by a calibrated uncertainty interval. We study the few-placebo regime, in which one treatment arm is much smaller than the other, as arises in unequal-allocation trials and small-holdout $A/B$ tests. The standard estimator in this setting is the X-Learner, and a natural way to obtain credible intervals is to make its second stage Bayesian. We show that these intervals under-cover: they contain the true effect less often than their nominal level. We trace this to a structural cause the X-Learner's regression target inherits the bias of a nuisance model fitted to the small arm, so the posterior is centered away from the true effect and we find that the standard remedy, regressing an orthogonal doubly-robu

arXiv:2605.27474v1 Announce Type: cross Abstract: Estimating how an outcome responds to a continuous treatment (the Average Dose-Response Function, or ADRF) is a core causal-inference primitive. However, when outcomes possess heavy tails, standard robust double machine learning (DML) deliberately suppresses these extremes to stabilize the bulk average. In high-stakes settings, such as financial returns or climate losses, this omitted 1-in-1000 extreme event is the actual target quantity. Furthermore, current methods that read the tail from a model's residuals suffer from circular dependence, causing tail shape inferences to shift drastically based solely on whether the core estimator is switched between Huber and Welsch.The research proposes an ADRF estimator that emits a structured tail-shape output alongside the standard point estimate. Its tail diagnostic (PDHTE+JK) evaluates the per-treatment tail shape from the outcome centered by a pilot median, successfully breaking the circular