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Spectral Probe-Circuits: A Three-Step Recipe for Identifying Attention-Head Circuits in Pretrained Transformers

arXiv

arXiv:2605.24059v1 Announce Type: cross Abstract: We present a three-step recipe for identifying attention-head circuits in pretrained transformers. A per-head spectral signal -- the time-integrated participation ratio of each head's attention output -- ranks heads doing sustained content-dependent computation without labels or attribution gradients. A task-pattern screen filters this general indicator into a task-specific candidate circuit, and group ablation against a matched-random control completes the causal claim. We validate across an 8x parameter range (51M to 1B-active / 7B-total), two architecture families (dense, mixture-of-experts), and four pretraining pipelines. The recipe ports: a 2-6 head induction circuit is causally necessary in every model tested, with a 94-100% drop in synthetic-induction top-1 after ablation. The spectral signal is predictive without supervision: on six independent seeds of a 51M-parameter probe model, the same computation identifies the seed-speci

control

Mitigating Gradient Pathology in PINNs through Aligned Constraint

arXiv

arXiv:2605.25001v1 Announce Type: new Abstract: While Physics-Informed Neural Networks (PINNs) are powerful for solving Partial Differential Equations (PDEs), their training is often paralyzed by gradient pathology. The gradients from the PDE residuals and boundary constraints oppose each other, trapping the model in local minima. Current solutions, such as adaptive weighting or hard constraints, either fail to fundamentally resolve this ill-conditioning or are limited to simple geometries. In this study, we systematically analyze the possible causes of this gradient pathology from the perspectives of loss landscapes and optimization dynamics. Based on the obtained conclusion, we propose Constraint-Aligned loss with Manifold Lifting (CAML). By reformulating all zeroth-order terms into aligned constraints, our method effectively mitigates gradient conflicts. In addition, we introduce a delay factor to help the optimizer skip the high-curvature area. Experiments demonstrate that our CAML

Counterfactually Safe Reinforcement Learning

arXiv

arXiv:2605.25114v1 Announce Type: cross Abstract: Reinforcement learning algorithms are generally designed to maximize the expected return across a population. However, a policy that is optimal on average may be suboptimal for certain individuals, leading to potential safety concerns. To address this, we first formalize the notion of individual harm from a counterfactual perspective and define harm as the event in which a chosen action results in a strictly worse outcome than a baseline alternative. We then propose a general two-stage procedure for learning policies that maximize the expected return while accounting for individual harm. We further establish the finite-sample properties of the learned policy, derive an upper bound on its sub-optimality gap, and show that the harm rate remains well-controlled. Numerical experiments on both simulated and real-world datasets demonstrate the effectiveness of the proposed approach.

reinforcement-learningcontrol

The Time is Here for Just-in-Time Systems: Challenges and Opportunities

arXiv

arXiv:2605.24096v1 Announce Type: cross Abstract: Core systems like key-value stores have historically taken years to build, and are designed to be general so as to amortize cost across deployments, paying a significant performance cost. We argue that LLM-based coding agents now make a different approach tractable: Just-in-Time Systems, in which the entire system is synthesized from scratch, specialized to the environment, workload, and required system properties. We present a JIT system synthesis pipeline, Jitskit, and explore its effectiveness in synthesizing key-value stores from spec cards that span different YCSB workloads, deployment constraints (e.g., compute resources), and system properties (e.g., consistency and durability). Jitskit iteratively refines a system implementation to match the specification against an evolving evaluation test suite. The resulting synthesized systems are performant, beating comparable state-of-the-art systems on 18 of 18 specs tried, by up to 4.6x

Data-Specific Hyper-Parameter Design: A Paradigm Shift in Reservoir Computing

arXiv

arXiv:2605.25221v1 Announce Type: cross Abstract: Reservoir computing typically relies on large, randomly generated reservoirs, enabling simple, often linear readouts. Over the past two decades, most constructions have exploited the freedom to select the reservoir, constrained primarily by stability conditions based on state contraction or memory capacity. However, these designs are largely independent of the input data and learning objective, resulting in a trial-and-error methodology driven by randomness. In high dimensions, the reservoir acts as a random embedding of the input history, implicitly relying on Johnson--Lindenstrauss--type concentration phenomena to preserve information. In contrast, we develop reservoir design principles from a geometric perspective for inputs generated by deterministic dynamical systems. Rather than relying on random embeddings, we require reservoir state increments to align within a cone around an input-determined vector subspace, and prove that such

Reward-free Alignment for Conflicting Objectives

arXiv

arXiv:2602.02495v3 Announce Type: replace-cross Abstract: Direct alignment methods are increasingly used to align large language models (LLMs) with human preferences. However, many real-world alignment problems involve multiple conflicting objectives, where naive aggregation of preferences can lead to unstable training and poor trade-offs. In particular, weighted loss methods may fail to identify update directions that simultaneously improve all objectives, and existing multi-objective approaches often rely on explicit reward models, introducing additional complexity and distorting user-specified preferences. The contributions of this paper are two-fold. First, we propose a Reward-free Alignment framework for Conflicted Objectives (RACO) that directly leverages pairwise preference data and resolves gradient conflicts via a novel clipped variant of conflict-averse gradient descent. We provide convergence guarantees to Pareto-critical points that respect user-specified objective weights,

MuJoCoUni:Persistent Batched Runtime Primitives for MuJoCo

arXiv

arXiv:2605.24922v1 Announce Type: new Abstract: We present MuJoCoUni, a downstream MuJoCo distribution for online robot learning and batched physics evaluation. Alongside the open-loop batched trajectory generation already provided by upstream mujoco.rollout, MuJoCoUni supplies runtime primitives for stateful environment execution. The target workloads need high-throughput parallel execution while retaining upstream CPU MuJoCo semantics for models, sensors, contact, and constraints. Its core object, BatchEnvPool, is a C++/pybind11 executor that owns per-environment mjModel copies, per-thread mjData workers, and an internal thread pool. It provides final-state-only short stepping, sparse reset, reset-lifecycle domain randomization, batched sensor forward evaluation without advancing dynamics, and batched Jacobian and height-field queries. The implementation is confined to the Python binding layer; MuJoCo's solver, contact model, integrator, and core source tree retain upstream semantics

AnnotateMissense: a genome-wide annotation and benchmarking framework for missense pathogenicity prediction

arXiv

arXiv:2605.24520v1 Announce Type: cross Abstract: Missense variant interpretation remains challenging because pathogenicity depends on heterogeneous evidence from population frequency, evolutionary conservation, transcript context, amino acid substitution severity, prior pathogenicity predictors and protein-language-model-derived features. We present AnnotateMissense, a scalable annotation, benchmarking and genome-wide prediction framework for missense variant interpretation. AnnotateMissense integrates hg38 missense variants derived from dbNSFP v5.1 with ANNOVAR annotations, dbNSFP transcript/protein descriptors, AlphaMissense scores, ESM-derived features, conservation metrics, population-frequency variables, established pathogenicity predictors and engineered amino acid/codon-context features. Using 132,714 ClinVar-labelled missense variants, we benchmarked machine-learning and deep-learning models under controlled feature configurations. The full 303-feature benchmark set achieved t

control

Language Movement Primitives: Grounding Language Models in Robot Motion

arXiv

arXiv:2602.02839v3 Announce Type: replace Abstract: Enabling robots to perform novel manipulation tasks from natural language instructions remains a fundamental challenge in robotics, despite significant progress in generalized problem solving with foundational models. Large vision and language models (VLMs) are capable of processing high-dimensional input data for visual scene and language understanding, as well as decomposing tasks into a sequence of logical steps; however, they struggle to ground those steps in embodied robot motion. On the other hand, robotics foundation models output action commands, but require in-domain fine-tuning or experience before they are able to perform novel tasks successfully. At its core, there still remains the fundamental challenge of connecting abstract task reasoning with low-level motion control. To address this disconnect, we propose Language Movement Primitives (LMPs), a framework that grounds VLM reasoning in Dynamic Movement Primitive (DMP) pa

manipulationcontrol

Is Decentralized AI Governable? From Regulative Policy to Constitutive Protocol

arXiv

arXiv:2605.24538v1 Announce Type: cross Abstract: Every major framework for governing artificial intelligence presupposes an identifiable entity -- a developer, deployer, or operator -- who can be held responsible and compelled to comply. Decentralized AI (DeAI) dissolves this presupposition. We analyze DeAI as a six-layer decentralizing stack -- model, training, compute, harness, identity, and ownership -- and show how partial decentralization across layers compounds into what we call the \emph{governance vacuum}: a condition in which AI systems are consequential enough to require governance but lack the properties that existing frameworks presuppose in their targets. This vacuum takes two analytically distinct forms: an \emph{accountability gap}, where no addressable principal can be identified, and an \emph{incapacitation gap}, where even an identified principal cannot alter the running system. We demonstrate that these failures are not merely jurisdictional but defeat every presupp

Self-supervised Hierarchical Visual Reasoning with World Model

arXiv

arXiv:2605.17537v2 Announce Type: replace Abstract: 3D open-world environments with adversarial opponents remain a core challenge for reinforcement learning due to their vast state spaces. Effective reasoning representations are essential in such settings. While existing self-supervised visual foresight reasoning approaches often suffer from multi-step error accumulation, many recent studies resort to injecting domain-specific knowledge for more stable guidance. Our key insight is that the photorealistic fidelity of visual reasoning representations is secondary; what truly matters is providing informative, task-relevant signals. To this end, we propose ResDreamer, a hierarchical world model in which each higher-level layer is trained to reconstruct the residuals of the layer below. This design enables progressive abstraction of increasingly sophisticated world dynamics and fosters the emergence of richer latent representations. Drawing inspiration from the "Bitter Lesson", ResDreamer t

reinforcement-learning

Improving Labeling Consistency with Detailed Constitutional Definitions and AI-Driven Evaluation

arXiv

arXiv:2605.24247v1 Announce Type: cross Abstract: Many automated labeling pipelines classify inputs into categories defined by a written specification, content moderation being a prominent use case. Simple category definitions are not detailed enough for labelers to produce the accurate, consistent golden labels these pipelines require. One solution is to write a prescriptive definition that settles enough real boundary cases that labelers cannot disagree with the written interpretation. In practice, definitions at that level of detail exceed what a human annotator can hold in working memory, so annotators fall back on intuition and the labels drift from the written rules, regressing on accuracy and consistency. We propose and demonstrate the efficacy of an AI-driven workflow in which AI helps write a per-category constitution that defines the label in enough detail to cover edge cases, and a frontier LLM interprets it on each input to produce the golden label more consistently and acc

Estimating Mixture Distributions via Stochastic Mirror Descent

arXiv

arXiv:2605.24929v1 Announce Type: cross Abstract: We revisit the classical problem of estimating an unknown distribution from its samples by fitting a mixture model that minimizes cross-entropy loss. Framing the task as a stochastic convex optimization problem over the space of $ M $-component mixture distributions, we propose a family of estimators derived from the stochastic mirror descent (SMD) algorithm. This optimization-based approach provides a principled and flexible framework that generalizes traditional estimators and proposes a variety of novel estimators through the choice of Bregman divergences. A key advantage of our method is that it scales efficiently with the number of candidate components $ f_i $; that is, one can employ a large set of basis distributions in the mixture model without incurring significant computational overhead. This enables richer approximations and improved estimation accuracy. Moreover, in the case of categorical distribution (discrete outcomes) ou

Querying structural and functional niches on spatial transcriptomics data

arXiv

arXiv:2410.10652v4 Announce Type: replace-cross Abstract: Cells in multicellular organisms coordinate to form structural and functional niches. With spatial transcriptomics (ST) enabling gene expression profiling in spatial contexts, it has been revealed that spatial niches serve as cohesive and recurrent units in physiological and pathological processes. These observations suggest universal tissue organization principles encoded by conserved niche patterns, and call for a query-based niche analytical paradigm beyond current computational tools. In this work, we defined the niche-query task, which is to identify similar niches across ST samples given a niche of interest (NOI). We further developed QueST, a specialized method for solving this task. QueST models each niche as a subgraph, uses contrastive learning to learn discriminative niche embeddings, and incorporates adversarial training to mitigate batch effects. In simulations and benchmark datasets, QueST outperformed existing met

Lying Is Just a Phase: The Hidden Alignment Transition in Language Model Scaling

arXiv

arXiv:2605.18838v3 Announce Type: replace-cross Abstract: Scaling laws predict loss from compute but not how capabilities interact. We measure the coupling between reasoning and truthfulness across 63 base models from 16 families and find a regime change invisible to loss curves: below a family-dependent critical scale N_c, capabilities anticorrelate (r = -0.989, p = 4 x 10^{-5} nonparametric permutation test); above it, they cooperate. N_c ~ 3.5B parameters [2.9B, 13.4B] (bootstrap 95% CI), but model size is not the only variable that determines phase. Architecture, data curation, and training recipe each shift N_c independently: curated training eliminated the coupling dip between Qwen generations (0.025 to 0.830 at matched scale), Gemma-4 at 4B achieves coupling 0.871, characteristic of 13B+ standard-trained models, through distillation and architectural innovation, and Phi at 1B matches web-trained coupling at 10B through data curation alone. Width normalization eliminates the anti

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